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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145275000_145275959_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
145275000 - 145275959
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATTGCTA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTTTCTAATT
Flanking Amino Acid:
KTADTEEQIEKNLLIPKGFP
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.1
57.9
40.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.1
0.79
0.8
82.5
32.7
Minor 5ss
42.2
-0.9
3.3
55.8
43
Minor BPS
62.4
0.47
1.6
79.49
37.4

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923