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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145282520_145284290_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145282520 - 145284290
Intron Length:
1771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATCTCTTCACTT
Flanking Amino Acid:
DKPITFEVSVGNFGRVTDGV
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
74.4
0.55
0.9
65.9
40.9
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
51.1
0.11
1.8
69.9
42

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923