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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145284472_145287956_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145284472 - 145287956
Intron Length:
3485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
CTTTTATGATCT
Flanking Amino Acid:
PEKPLITGGNRNYQYLPYDE
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
84.6
0.86
1
74
41.2
Major PPT
72.7
0.51
0.9
65.1
41.2
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
49.1
0.01
2
73.56
43.2

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923