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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145297275_145297745_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145297275 - 145297745
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAACTTG
5'SS Class:
major
3'SS Sequence:
TTTCTATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTCTATATTT
Flanking Amino Acid:
VIELYDDDAVGKAEYIGSTV
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
64.8
41.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
79.4
0.66
0.8
78.8
33.8
Minor 5ss
47
-0.3
3
60.9
46.1
Minor BPS
61.5
0.44
1.8
84.57
36.4

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923