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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145312363_145314197_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145312363 - 145314197
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TACTTCCCAATT
Flanking Amino Acid:
IPKQLNPVFGRSFEIQATFP
Intron Amino Acid Position:
1403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
79
0.65
0.9
74.4
35.8
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
49.6
0.05
1.9
69.7
41.4

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923