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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145314369_145315358_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145314369 - 145315358
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTCTCTCCACT
Flanking Amino Acid:
ATCGLQSQYEIEGYNAWRDA
Intron Amino Acid Position:
1460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
82.1
0.72
0.7
76.3
25.7
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
56.3
0.28
2
81.4
40.1

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923