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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145318479_145319045_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145318479 - 145319045
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGATGTTTATTT
Flanking Amino Acid:
YHKDKPGMEQGRVQMWVDIF
Intron Amino Acid Position:
1562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.8
0.74
1
82.6
32.9
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
49.4
0.04
2
69.05
42.4

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923