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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145321221_145322945_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145321221 - 145322945
Intron Length:
1725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTGCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
TGTCCCACTATG
Flanking Amino Acid:
GQRSSDIYVKGWIKGLEEDK
Intron Amino Acid Position:
1624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
63.4
0.3
0.9
57.3
38.7
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
42.6
-0.7
2.1
51.5
42.3

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923