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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145323695_145324845_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145323695 - 145324845
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGCATC
5'SS Class:
major
3'SS Sequence:
CTCTCTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TCTCTCTGATCC
Flanking Amino Acid:
WPFIKAGELTGKVEAEFHLV
Intron Amino Acid Position:
1760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.4
44
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
73.2
0.52
1
65.2
40.3
Minor 5ss
43
-0.8
3.2
60.9
43.9
Minor BPS
51.1
0.01
1.7
64.26
41.2

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923