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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145340355_145345583_F

Intron Information:

Intron Rank:
139063
Intron Class:
major
Intron Phase:
Intron Coordinates:
145340355 - 145345583
Intron Length:
5229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTCTTATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
75.1
35.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.7
0.78
0.8
80
30.9
Minor 5ss
37.3
-1.4
2.7
42.3
38.4
Minor BPS
54.4
0.13
2
71.68
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018650
145340228 - 145350042
9815