About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145519627_145522541_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145519627 - 145522541
Intron Length:
2915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GCATCTCTAATA
Flanking Amino Acid:
LKDRNEPCHIIQILEIMAAV
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
88.9
0.88
0.6
88.5
21.1
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
54.4
0.13
1.7
61.44
38.9

Associated Gene:

Gene:
TATDN1
Ensembl Gene ID:
ENSAPLG00000006883
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007161
145519524 - 145534966
15443