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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145525865_145525990_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145525865 - 145525990
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
HCRNSHAEFLDIMRRNRERS
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.6
0.73
0.7
79.3
26.3
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
TATDN1
Ensembl Gene ID:
ENSAPLG00000006883
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007161
145519524 - 145534966
15443