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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145526077_145530257_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145526077 - 145530257
Intron Length:
4181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTGTTTAAAA
Flanking Amino Acid:
LEFCPKDTQLKYFEKQFDLS
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
60
0.31
1.9
71.99
40.5

Associated Gene:

Gene:
TATDN1
Ensembl Gene ID:
ENSAPLG00000006883
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007161
145519524 - 145534966
15443