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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145530545_145531765_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145530545 - 145531765
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTCG
5'SS Class:
major
3'SS Sequence:
TGTCTTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTACTTAAAA
Flanking Amino Acid:
KDALQLAQTNDMFYSTAGCH
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.8
39.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75.8
0.58
0.9
73.8
36.9
Minor 5ss
46.7
-0.3
2.4
55.7
43.9
Minor BPS
76.1
0.81
1.5
86.19
31.8

Associated Gene:

Gene:
TATDN1
Ensembl Gene ID:
ENSAPLG00000006883
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007161
145519524 - 145534966
15443