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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145531830_145533033_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145531830 - 145533033
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TTTTCTTTCAAG
Flanking Amino Acid:
ERAVKVGVKKFLITGGSLQD
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
80.2
0.68
1
79.1
33.2
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
61
0.2
1.9
72.3
40.7

Associated Gene:

Gene:
TATDN1
Ensembl Gene ID:
ENSAPLG00000006883
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007161
145519524 - 145534966
15443