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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145534969_145535293_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145534969 - 145535293
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CGTGTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATCC
Flanking Amino Acid:
LRHLESWCIHRDKYRYLACL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.8
45.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.1
0.45
1
62
39.9
Minor 5ss
26.7
-2.7
3
31.4
42.5
Minor BPS
66.3
0.49
1.5
74.77
35.9

Associated Gene:

Gene:
NDUFB9
Ensembl Gene ID:
ENSAPLG00000007143
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007405
145534883 - 145538901
4019