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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145547775_145549343_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145547775 - 145549343
Intron Length:
1569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCAGT
5'SS Class:
major
3'SS Sequence:
CATTTGGCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTGTTCCTAACT
Flanking Amino Acid:
CCSEDTIPSQVSDYDYFSVS
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
63.8
47.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
65.6
0.35
1.1
63
42.7
Minor 5ss
45.6
-0.5
3
67
43.7
Minor BPS
71.8
0.76
1.6
88.29
36.7

Associated Gene:

Gene:
MTSS1
Ensembl Gene ID:
ENSAPLG00000015070
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015743
145546723 - 145658762
112040
ENSAPLT00000007406
145546723 - 145658762
112040