About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145552176_145553182_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145552176 - 145553182
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAC
5'SS Class:
major
3'SS Sequence:
GTTTCGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
TMGAWASTDKLSNGFYHCSL
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
73.6
30.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.2
0.72
0.9
73.1
42.1
Minor 5ss
27.7
-2.6
2.9
33.7
41.9
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
MTSS1
Ensembl Gene ID:
ENSAPLG00000015070
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007406
145546723 - 145658762
112040