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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145560828_145562782_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145560828 - 145562782
Intron Length:
1955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCTT
U12 Branch Point Sequence:
TTGTCTCTCACA
Flanking Amino Acid:
TTMSRKSSVCSSLNSVNSSD
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
34.7
-0.9
4.2
75
39.9
Major PPT
81.5
0.71
0.8
76.3
32.3
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
53.2
0.09
2.1
71.56
40.9

Associated Gene:

Gene:
MTSS1
Ensembl Gene ID:
ENSAPLG00000015070
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007406
145546723 - 145658762
112040
ENSAPLT00000015743
145546723 - 145658762
112040