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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145577078_145578328_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
145577078 - 145578328
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCAACAAAATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTTTCAACA
Flanking Amino Acid:
SIESKLRQFSSALIDCLINP
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
49.5
-0
1
46.5
39.3
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
MTSS1
Ensembl Gene ID:
ENSAPLG00000015070
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015743
145546723 - 145658762
112040
ENSAPLT00000007406
145546723 - 145658762
112040