About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145642121_145644772_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145642121 - 145644772
Intron Length:
2652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTATGCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTTTGTTATCT
Flanking Amino Acid:
NKAGKLQSQLRTTVVAAAAF
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.8
0.49
1
67
43.5
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
54.8
0.23
2.3
80.05
42

Associated Gene:

Gene:
MTSS1
Ensembl Gene ID:
ENSAPLG00000015070
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015743
145546723 - 145658762
112040
ENSAPLT00000007406
145546723 - 145658762
112040