Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145644835_145658690_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

145644835 - 145658690

Intron Length:

13856

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TATTCATTATTG

Flanking Amino Acid:

LFQTIISDMKGSYPVWEDFI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

0.9

69.4

35.7

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

96.3

1.04

0.5

92.6

17.2

Minor 5ss

25.3

-2.8

3.2

32.7

42.3

Minor BPS

56.3

0.06

1.9

65.93

41.8

Associated Gene:

Gene:

MTSS1

Ensembl Gene ID:

ENSAPLG00000015070

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015743

145546723 - 145658762

112040

ENSAPLT00000007406

145546723 - 145658762

112040