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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145693624_145708125_R

Intron Information:

Intron Rank:
129383
Intron Class:
major
Intron Phase:
Intron Coordinates:
145693624 - 145708125
Intron Length:
14502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.6
0.6
0.9
75.5
33.2
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
70.8
0.73
1.5
84.72
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038660
145693606 - 145715954
22349