About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145707965_145708125_R

Intron Information:

Intron Rank:
129387
Intron Class:
major
Intron Phase:
Intron Coordinates:
145707965 - 145708125
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CACCCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
80.5
0.69
1
82.5
26.5
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
65.6
0.49
1.3
65.62
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047850
145707871 - 145708398
528