About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145710299_145714965_R

Intron Information:

Intron Rank:
129385
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
145710299 - 145714965
Intron Length:
4667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAAACCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTCTTAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
59.6
0.22
1.1
58.2
40.5
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
70
0.61
1.6
77.59
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038660
145693606 - 145715954
22349