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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145715065_145715625_R

Intron Information:

Intron Rank:
129386
Intron Class:
major
Intron Phase:
Intron Coordinates:
145715065 - 145715625
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
CTTGGCTGACGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1
67.7
37.5
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
79.5
0.66
0.9
76.8
31.8
Minor 5ss
35.3
-1.7
3.1
46.4
37.3
Minor BPS
40.4
-0.6
2.3
59.75
49.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016822
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038660
145693606 - 145715954
22349