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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145726222_145728615_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145726222 - 145728615
Intron Length:
2394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
GCACGTGTAACT
Flanking Amino Acid:
RRFEAPEARKGKIEVNCSDI
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.1
41.1
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
91.9
0.94
0.6
88.3
21.4
Minor 5ss
34.5
-1.8
2.8
42.5
44.3
Minor BPS
43.2
-0.4
2.3
58.47
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020771
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045260
145725937 - 145729101
3165