Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145749138_145749404_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

145749138 - 145749404

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCCACA

5'SS Class:

weak_major

3'SS Sequence:

TGCTTAATATTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

GATTGCTTAATA

Flanking Amino Acid:

FIRSTMEQCTSQKIPEMPAD

Intron Amino Acid Position:

1112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.2

64.2

41.8

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

65.7

0.35

64.6

40.4

Minor 5ss

54.6

0.16

2.1

67.5

43.3

Minor BPS

66.5

0.52

1.8

73.38

38.5

Associated Gene:

Gene:

WASHC5

Ensembl Gene ID:

ENSAPLG00000014127

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014807

145747455 - 145774856

27402