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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145750289_145751194_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145750289 - 145751194
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAGTATTTAATG
Flanking Amino Acid:
HLAAALENLNKAILADIEAH
Intron Amino Acid Position:
985

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.1
0.7
0.7
78.7
29.3
Minor 5ss
36.9
-1.5
3.1
49.9
40.3
Minor BPS
55.5
0.04
1.5
55.72
40

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402