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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145752428_145752509_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145752428 - 145752509
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATGCCTCACCC
Flanking Amino Acid:
NAVSPLKGIIANSNKVYSAA
Intron Amino Acid Position:
924

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.2
0.86
0.6
87.5
22.7
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
53
0.07
2
67.81
43.6

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402