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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145752613_145753343_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145752613 - 145753343
Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATTT
Flanking Amino Acid:
LCFMIVKELQNFLSMFQKNI
Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.5
0.78
0.8
85.3
28.3
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
62.9
0.48
1.5
80.46
35.9

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402