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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145753507_145753834_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145753507 - 145753834
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTTTGTTTAATT
Flanking Amino Acid:
CREILRITDPKITCYIDQMN
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
76
0.58
0.8
74.6
35.3
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
67.8
0.64
1.8
82.98
39.3

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402