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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145756355_145757817_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145756355 - 145757817
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCAGTTA
5'SS Class:
major
3'SS Sequence:
TTTTCTATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTCTATTAAAG
Flanking Amino Acid:
DYAQLGPRYEVAKLTHAISI
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1
65.3
36.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
78.4
0.64
1
79.6
31.4
Minor 5ss
33.1
-1.9
3.6
46.3
49
Minor BPS
57.1
0.08
1.8
67.38
39.6

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402