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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145757959_145758073_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145757959 - 145758073
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTGTCTCATCT
Flanking Amino Acid:
SGELVSYVRKVLQIIPESMF
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.8
0.49
1
74.6
33.1
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
55.8
0.26
1.9
79.56
42.7

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402