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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145761593_145762268_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145761593 - 145762268
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTGTTTTCAATA
Flanking Amino Acid:
TAQFEFILKEMFKQMLSEKQ
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.2
66.9
40
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
76.6
0.6
0.9
74.3
35.3
Minor 5ss
43.8
-0.7
2.9
60
44.6
Minor BPS
62
0.37
1.5
70.53
36.5

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402