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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145764624_145766154_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145764624 - 145766154
Intron Length:
1531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAAAAT
5'SS Class:
major
3'SS Sequence:
GTTTTCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AAATTGTAAACA
Flanking Amino Acid:
IVDKYFPDNWVISIYMGITV
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
74
36.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74
0.54
0.9
73.6
37
Minor 5ss
34.1
-1.8
3.1
40.7
45.3
Minor BPS
46.6
-0.2
2.3
59.23
40.5

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402