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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145773957_145774832_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
145773957 - 145774832
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAC
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
59.6
0.24
1
65.2
28.2
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
WASHC5
Ensembl Gene ID:
ENSAPLG00000014127
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014807
145747455 - 145774856
27402