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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145775631_145778359_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
145775631 - 145778359
Intron Length:
2729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TATCTGTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
64.9
0.37
1
61
37.5
Major PPT
81.8
0.72
0.9
73.4
41
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
47.5
-0.1
2.2
69.92
41.4

Associated Gene:

Gene:
NSMCE2
Ensembl Gene ID:
ENSAPLG00000014092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030681
145775529 - 145902023
126495