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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145778505_145804111_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145778505 - 145804111
Intron Length:
25607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
CTGTACGAAATA
Flanking Amino Acid:
NVALDLVESFNDAEDVNSME
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
73
0.57
1.2
74
41.2
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
42.8
-0.5
2.3
55.32
44.3

Associated Gene:

Gene:
NSMCE2
Ensembl Gene ID:
ENSAPLG00000014092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030681
145775529 - 145902023
126495
ENSAPLT00000025995
145775529 - 145902023
126495
ENSAPLT00000014672
145777515 - 145835457
57943
ENSAPLT00000041481
145775529 - 145846406
70878
ENSAPLT00000034925
145777515 - 145846406
68892