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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145804219_145833980_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145804219 - 145833980
Intron Length:
29762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATTC
Flanking Amino Acid:
MEAIEETVNQIKQEKPENIP
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.7
0.83
0.8
81.6
30.1
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
61.1
0.33
1.5
68.82
37.9

Associated Gene:

Gene:
NSMCE2
Ensembl Gene ID:
ENSAPLG00000014092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025995
145775529 - 145902023
126495
ENSAPLT00000041481
145775529 - 145846406
70878
ENSAPLT00000014672
145777515 - 145835457
57943
ENSAPLT00000034925
145777515 - 145846406
68892
ENSAPLT00000030681
145775529 - 145902023
126495
ENSAPLT00000027580
145774999 - 145902023
127025