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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145834135_145898588_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145834135 - 145898588
Intron Length:
64454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTATTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAAATATTAAAT
Flanking Amino Acid:
KDQLKEMRKQFRLKSDNNDN
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.2
0.73
0.7
77.4
29.8
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
51.9
0.14
1.7
69.64
40.1

Associated Gene:

Gene:
NSMCE2
Ensembl Gene ID:
ENSAPLG00000014092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025995
145775529 - 145902023
126495
ENSAPLT00000030681
145775529 - 145902023
126495
ENSAPLT00000027580
145774999 - 145902023
127025