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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145898693_145899012_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145898693 - 145899012
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GCTCCTCTAAAT
Flanking Amino Acid:
QVNFICPITQVEMKKPVRNK
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.9
0.67
0.9
73.5
40.5
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
50
0.08
1.8
68.39
42

Associated Gene:

Gene:
NSMCE2
Ensembl Gene ID:
ENSAPLG00000014092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025995
145775529 - 145902023
126495
ENSAPLT00000030681
145775529 - 145902023
126495
ENSAPLT00000027580
145774999 - 145902023
127025