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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145899120_145901908_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145899120 - 145901908
Intron Length:
2789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTCTTATTT
Flanking Amino Acid:
QTRKQQKKKVRCPKIGCSHD
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.5
36.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85
0.79
0.9
83.2
32
Minor 5ss
43.6
-0.7
2.9
56.2
48
Minor BPS
68.9
0.67
1.5
82.89
39.2

Associated Gene:

Gene:
NSMCE2
Ensembl Gene ID:
ENSAPLG00000014092
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030681
145775529 - 145902023
126495
ENSAPLT00000027580
145774999 - 145902023
127025
ENSAPLT00000025995
145775529 - 145902023
126495