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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145911911_145913763_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145911911 - 145913763
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
AAATCTCTAACC
Flanking Amino Acid:
LRKFVFSNEERTQLRLESLE
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
77.9
0.63
0.7
72.8
25.3
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
60.5
0.31
1.6
67.99
36.8

Associated Gene:

Gene:
TRIB1
Ensembl Gene ID:
ENSAPLG00000014001
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014577
145910857 - 145914408
3552