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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145971909_145972196_F

Intron Information:

Intron Rank:
123629
Intron Class:
major
Intron Phase:
Intron Coordinates:
145971909 - 145972196
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAAGCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.7
0.71
0.8
76.9
36.8
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
60.5
0.41
1.8
75.01
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016670
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040235
145971243 - 145972474
1232