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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145984189_145985955_F

Intron Information:

Intron Rank:
126059
Intron Class:
major
Intron Phase:
Intron Coordinates:
145984189 - 145985955
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ACACCAGTGACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
75.7
0.58
1
72.5
37.6
Minor 5ss
35
-1.7
3.2
48.2
47.9
Minor BPS
41.3
-0.8
2.2
44.28
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017922
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024435
145984112 - 145987208
3097