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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14605756_14608929_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14605756 - 14608929
Intron Length:
3174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTCCCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATCTCTTTCATT
Flanking Amino Acid:
TFTLAGAPRSDKCGDTIKIL
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.6
37.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.7
0.56
0.9
67.5
32.9
Minor 5ss
34.4
-1.8
3.2
45.9
42.3
Minor BPS
62.3
0.47
1.7
77.48
40

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160