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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14609105_14650678_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14609105 - 14650678
Intron Length:
41574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTCCATTTATCT
Flanking Amino Acid:
PHFDLEDRDCKYDYVEVIDG
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
78.2
36.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
75.2
0.57
1
67.8
42.7
Minor 5ss
37.8
-1.4
2.7
44.3
36.8
Minor BPS
54
0.2
1.8
74.15
42.7

Associated Gene:

Gene:
NRP1
Ensembl Gene ID:
ENSAPLG00000003623
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003738
14605270 - 14714429
109160