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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146117950_146199693_F

Intron Information:

Intron Rank:
123787
Intron Class:
major
Intron Phase:
Intron Coordinates:
146117950 - 146199693
Intron Length:
81744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGAT
5'SS Class:
major
3'SS Sequence:
TCTTTCTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTTTCTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.6
37.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.1
0.7
0.8
77.6
29.8
Minor 5ss
37
-1.5
3.6
55.1
49.2
Minor BPS
71.9
0.68
1.5
79.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036544
146117109 - 146200190
83082