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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_146196684_146199693_F

Intron Information:

Intron Rank:
123786
Intron Class:
major
Intron Phase:
Intron Coordinates:
146196684 - 146199693
Intron Length:
3010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTTTCTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.4
34.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.1
0.7
0.8
77.6
29.8
Minor 5ss
32.9
-1.9
3.6
47
48.4
Minor BPS
71.9
0.68
1.5
79.1
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023477
146196647 - 146200190
3544